epicontacts - Handling, Visualisation and Analysis of Epidemiological Contacts
A collection of tools for representing epidemiological contact data, composed of case line lists and contacts between cases. Also contains procedures for data handling, interactive graphics, and statistics.
Last updated 7 months ago
outbreak
8.70 score 15 stars 2 packages 117 scripts 588 downloadsoutbreaks - A Collection of Disease Outbreak Data
Empirical or simulated disease outbreak data, provided either as RData or as text files.
Last updated 2 years ago
6.66 score 51 stars 259 scripts 1.2k downloadsoutbreaker2 - Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
Bayesian reconstruction of disease outbreaks using epidemiological and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C and Ferguson N. 2014. <doi:10.1371/journal.pcbi.1003457>. Campbell, F, Cori A, Ferguson N, Jombart T. 2019. <doi:10.1371/journal.pcbi.1006930>.
Last updated 3 years ago
5.62 score 1 packages 100 scripts 349 downloads