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epicontacts - Handling, Visualisation and Analysis of Epidemiological Contacts
A collection of tools for representing epidemiological contact data, composed of case line lists and contacts between cases. Also contains procedures for data handling, interactive graphics, and statistics.
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outbreak
8.37 score 18 stars 1 dependents 160 scripts 708 downloadsoutbreaker2 - Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
Bayesian reconstruction of disease outbreaks using epidemiological and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C and Ferguson N. 2014. <doi:10.1371/journal.pcbi.1003457>. Campbell, F, Cori A, Ferguson N, Jombart T. 2019. <doi:10.1371/journal.pcbi.1006930>.
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cpp
8.02 score 1 dependents 114 scripts 446 downloadsoutbreaks - A Collection of Disease Outbreak Data
Empirical or simulated disease outbreak data, provided either as RData or as text files.
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7.03 score 54 stars 482 scripts 1.4k downloads