Customising priors | Customizing likelihood | A null model | A model using symptom onset only | Customising movements | Movements in outbreaker2 | A (fake) Gibbs sampler for mu | A new movement of ancestries

Running the analysis with defaults | Analysing the results | Graphics | Using summary | Customising settings and priors

Installing the package | Main visible functions of the package | Main internal functions

List of available functions | Function signatures | Arguments

make_epicontacts() | $linelist | $contacts | Generics | print.epicontacts() | summary.epicontacts() | subset.epicontacts() | plot.epicontacts()

Introduction | Loading Data | Example Dataset | Creating epicontacts Object | Data Manipulation | Access Unique Identifiers | Subsetting | Visualisation | Default Plotting Method | 3D plots | Analysis | Extract Characteristics of Pairwise Nodes | Identify Clusters | Calculate Degree | References