Package: outbreaker2 1.1.3

outbreaker2: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data

Bayesian reconstruction of disease outbreaks using epidemiological and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C and Ferguson N. 2014. <doi:10.1371/journal.pcbi.1003457>. Campbell, F, Cori A, Ferguson N, Jombart T. 2019. <doi:10.1371/journal.pcbi.1006930>.

Authors:Thibaut Jombart [aut], Finlay Campbell [aut, cre], Rich Fitzjohn [aut], Gerry Tonkin-Hill [ctb], Kristjan Eldjarn [ctb], Alexis Robert [ctb]

outbreaker2_1.1.3.tar.gz
outbreaker2_1.1.3.zip(r-4.5)outbreaker2_1.1.3.zip(r-4.4)outbreaker2_1.1.3.zip(r-4.3)
outbreaker2_1.1.3.tgz(r-4.4-x86_64)outbreaker2_1.1.3.tgz(r-4.4-arm64)outbreaker2_1.1.3.tgz(r-4.3-x86_64)outbreaker2_1.1.3.tgz(r-4.3-arm64)
outbreaker2_1.1.3.tar.gz(r-4.5-noble)outbreaker2_1.1.3.tar.gz(r-4.4-noble)
outbreaker2_1.1.3.tgz(r-4.4-emscripten)outbreaker2_1.1.3.tgz(r-4.3-emscripten)
outbreaker2.pdf |outbreaker2.html✨
outbreaker2/json (API)
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11 exports 1.95 score 53 dependencies 1 dependents 7 mentions 100 scripts 342 downloads

Last updated 2 years agofrom:45597077c9. Checks:OK: 1 NOTE: 8. Indexed: yes.

Exports:bind_to_functioncases_palchains_palcreate_configcreate_paramcustom_likelihoodscustom_movescustom_priorsget_cpp_apioutbreakeroutbreaker_data

Dependencies:apebase64encbslibcachemclicolorspacedigestevaluatefansifarverfastmapfontawesomefsggplot2gluegtablehighrhtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigR6rappdirsRColorBrewerRcpprlangrmarkdownsassscalestibbletinytexutf8vctrsviridisLitevisNetworkwithrxfunyaml